The Fastest Alignment of DNA

In a study on DNA sequences, Syed Abdul Mutalib and his team from Faculty of Electrical Engineering and Faculty of Pharmacy invented a multicore high performance 128 based-pairs DNA sequence alignment acceleration chip which is the fastest chip for the alignment of DNA sequence based pairs. It can align 128 based-pair DNA sequences in 60 nanoseconds using high sensitivity local alignment algorithm. The 16 cores inside the chip are capable of boosting the performance of alignment from 128 to 2048 based-pairs in 60 nanoseconds.

 

AlignmentOfDNAThis resource optimisation concept was used to optimise the performance of the chip when dealing with millions of based pair. Its multicore technology is capable of accelerating 2048 based-pairs in 60 nanoseconds and is very accurate. The chip enables a parallel computational method with resource optimisation techniques providing minimal result size using optimised data and resource technique. The chip will reduce searching time and similarity identification for large DNA data sequences and is capable of high precision scanning or alignment. The processing is fast and accurate.

Contact Information:

Syed Abdul Mutalib Al Junid1 (This email address is being protected from spambots. You need JavaScript enabled to view it.)
Zulkifli Abd Majid1 (This email address is being protected from spambots. You need JavaScript enabled to view it.)
Mohd Zaki Salleh2 (This email address is being protected from spambots. You need JavaScript enabled to view it.)
Teh Lay Kek2 (This email address is being protected from spambots. You need JavaScript enabled to view it.)
Nur Farah Ain Saliman1
Nur Dalilah Ahmad Sabri1

1Faculty of Electrical Engineering
UiTM Shah Alam

2Faculty of Pharmacy & iPROMISE
UiTM Puncak Alam

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